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arq5x / gemini

a lightweight db framework for exploring genetic variation.
http://gemini.readthedocs.org
MIT License
317 stars 119 forks source link

Failed fresh installation v0.30.2 #956

Open eddgeag opened 2 years ago

eddgeag commented 2 years ago

Hello,

I was trying to download gemini from* https://gemini.readthedocs.io/en/latest/index.html?highlight=install wget https://github.com/arq5x/gemini/raw/master/gemini/scripts/gemini_install.py python gemini_install.py $tools $data PATH=$tools/bin:$data/anaconda/bin:$PATH

When I clone the test on the appropriate version, 0.30.2, I encountered two problems:

Help, please.

(1) One already repported https://github.com/arq5x/gemini/issues/951 I could not fixed with the comment they say. (2) I made again a fresh installation and I get the following error, simmilar to Using gemini found at: /usr/local/bin/gemini Traceback (most recent call last): File "/usr/local/bin/gemini", line 7, in gemini_main.main() File "/usr/local/share/gemini/anaconda/lib/python2.7/site-packages/gemini/gemini_main.py", line 1249, in main args.func(parser, args) File "/usr/local/share/gemini/anaconda/lib/python2.7/site-packages/gemini/gemini_main.py", line 201, in load_fn from gemini import gemini_load File "/usr/local/share/gemini/anaconda/lib/python2.7/site-packages/gemini/gemini_load.py", line 11, in from cluster_helper.cluster import cluster_view File "/usr/local/share/gemini/anaconda/lib/python2.7/site-packages/cluster_helper/cluster.py", line 24, in from ipyparallel import Client File "/usr/local/share/gemini/anaconda/lib/python2.7/site-packages/ipyparallel/init.py", line 13, in from traitlets.config.configurable import MultipleInstanceError File "/usr/local/share/gemini/anaconda/lib/python2.7/site-packages/traitlets/config/init.py", line 6, in from .application import File "/usr/local/share/gemini/anaconda/lib/python2.7/site-packages/traitlets/config/application.py", line 17, in from decorator import decorator File "/usr/local/share/gemini/anaconda/lib/python2.7/site-packages/decorator.py", line 162 print('Error in generated code:', file=sys.stderr) ^ SyntaxError: invalid syntax Traceback (most recent call last): File "/usr/local/bin/gemini", line 7, in gemini_main.main() File "/usr/local/share/gemini/anaconda/lib/python2.7/site-packages/gemini/gemini_main.py", line 1249, in main args.func(parser, args) File "/usr/local/share/gemini/anaconda/lib/python2.7/site-packages/gemini/gemini_main.py", line 201, in load_fn from gemini import gemini_load File "/usr/local/share/gemini/anaconda/lib/python2.7/site-packages/gemini/gemini_load.py", line 11, in from cluster_helper.cluster import cluster_view File "/usr/local/share/gemini/anaconda/lib/python2.7/site-packages/cluster_helper/cluster.py", line 24, in from ipyparallel import Client File "/usr/local/share/gemini/anaconda/lib/python2.7/site-packages/ipyparallel/init.py", line 13, in from traitlets.config.configurable import MultipleInstanceError File "/usr/local/share/gemini/anaconda/lib/python2.7/site-packages/traitlets/config/init.py", line 6, in from .application import * File "/usr/local/share/gemini/anaconda/lib/python2.7/site-packages/traitlets/config/application.py", line 17, in from decorator import decorator File "/usr/local/share/gemini/anaconda/lib/python2.7/site-packages/decorator.py", line 162 print('Error in generated code:', file=sys.stderr) ^ SyntaxError: invalid syntax