Hi,
This is perhaps not a question particularly for lumpy but help would be really appreciated.
I can install lumpy using shell command: cd lumpy-sv && export ZLIB_PATH="/usr/lib/x86_64-linux-gnu/" && make.
However, when I tried to include this line inside a Makefile, and install lumpy through Makefile I got the following error:
configure.ac:26: warning: AC_INIT: not a literal: make1:
....
cd lib/htslib && \ ./configure --disable-bz2 --disable-lzma --enable-libcurl ./configure: 4: ./configure: 1.4: not found./configure: 30: ./configure: Syntax error: Unterminated quoted string
It seems that the configure executable is not generated successfully. I guess it's the grammar difference between shell and make that cause the problem in the line of the lumpy Makefile:
htslib: $(shell cd lib/htslib && autoreconf)
Hi, This is perhaps not a question particularly for lumpy but help would be really appreciated. I can install lumpy using shell command:
cd lumpy-sv && export ZLIB_PATH="/usr/lib/x86_64-linux-gnu/" && make.However, when I tried to include this line inside a Makefile, and install lumpy through Makefile I got the following error:
configure.ac:26: warning: AC_INIT: not a literal: make1:....cd lib/htslib && \ ./configure --disable-bz2 --disable-lzma --enable-libcurl ./configure: 4: ./configure: 1.4: not found./configure: 30: ./configure: Syntax error: Unterminated quoted stringIt seems that the configure executable is not generated successfully. I guess it's the grammar difference between shell and make that cause the problem in the line of the lumpy Makefile:
htslib: $(shell cd lib/htslib && autoreconf)Any idea on how to solve this? Thanks a lot!
Yue