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arq5x / lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery
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DUP and DUP:TANDEM #270

Open arkyl opened 6 years ago

arkyl commented 6 years ago

Hi, I noticed that the lumpy vcf header included both DUP and DUP:TANDEM sv types. I am wondering if lumpy's DUP are actually just DUP:TANDEM, since PE and SR can only detect DUP:TANDEM? Thanks much.

Yue

jbreynier commented 3 years ago

Hello,

I had the same question: what is the difference between DUP and DUP:TANDEM in the final VCF output? Thank you in advance for your help!

J-B

ryanlayer commented 3 years ago

Yes. DUP refers to a tandem duplication.

On Wed, Jun 16, 2021 at 4:06 AM Jean-Baptiste Reynier < @.***> wrote:

Hello,

I had the same question: what is the difference between DUP and DUP:TANDEM in the final VCF output? Thank you in advance for your help!

J-B

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