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arq5x / lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery
MIT License
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lumpy_filter: report total number of alignments #282

Closed brentp closed 5 years ago

brentp commented 5 years ago

I will implement this to report the value to stderr. This will be a useful QC combined with the number of split and discordant reads now reported by smoove.

brentp commented 5 years ago

this is implemented.