count total number of aligned reads inside of lumpy_filter

arq5x / lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery

MIT License

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count total number of aligned reads inside of lumpy_filter #284

Closed brentp closed 5 years ago

brentp commented 5 years ago

for QC it's good to know the ratio of split and discordants to total reads. This outputs the count of total (passing) reads to stderr. It will not affect runtime.

brentp commented 5 years ago

ping @ryanlayer