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arq5x / lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery
MIT License
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configure: error: Cannot find some needed GSL include files #285

Open cyanb007 opened 5 years ago

cyanb007 commented 5 years ago

Hi, I want to install DRAGON code for cosmic ray propagation in my MacOS High Sierra OS. For installation the DRAGON code, I need GSL and CFITSIO libraries. I put the gsl-2.5, cfitsio and DRAGON in the same folder. First I installed gsl-2.5 by going to the gsl-2.5 folder and writing the following commands

  1. ./configure
  2. sudo make
  3. sudo make check
  4. sudo make install
  5. sudo make installcheck Installed without any error.
  6. I go to the Then I successfully installed the cfitsio by going to the cfitsio folder and carrying ou the commands
  7. ./configure
  8. make
  9. make install installed without error.

Then I go to the DRAGON folder and write the following commands

  1. ./start.sh
    No error found But when I wrote ./configure --with-cfitsio=$ --with-numcpu=4

it gives the following errorchecking string usability... no checking string presence... yes configure: WARNING: string: present but cannot be compiled configure: WARNING: string: check for missing prerequisite headers? configure: WARNING: string: see the Autoconf documentation configure: WARNING: string: section "Present But Cannot Be Compiled" configure: WARNING: string: proceeding with the compiler's result checking for string... no checking for gsl-config... /usr/local/bin/gsl-config checking gsl/gsl_vector.h usability... no checking gsl/gsl_vector.h presence... yes configure: WARNING: gsl/gsl_vector.h: present but cannot be compiled configure: WARNING: gsl/gsl_vector.h: check for missing prerequisite headers? configure: WARNING: gsl/gsl_vector.h: see the Autoconf documentation configure: WARNING: gsl/gsl_vector.h: section "Present But Cannot Be Compiled" configure: WARNING: gsl/gsl_vector.h: proceeding with the compiler's result checking for gsl/gsl_vector.h... no configure: error: Cannot find some needed GSL include files

Please sugggest how can I fix the problem?

calebgemmell commented 3 years ago

Hi there, I'm currently having the same issue you've outlined above, did you manage to solve it?

flaaaaaash commented 1 year ago

same, have you manage to solve this?