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arq5x / lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery
MIT License
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REF column are all N, #324

Open shengwugou opened 4 years ago

shengwugou commented 4 years ago

Hi, I have a question,when i use lumpyexpress , the VCF result REF column are all N, although it tells me it is DEL or INDEL or something else. Is this normal?

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Thank you a lot in advance for your help!

ryanlayer commented 4 years ago

Yep. That’s expected.

On Jan 7, 2020, at 6:56 PM, shengwugou notifications@github.com wrote:

 Hi, I have a question,when i use lumpyexpress , the VCF result REF column are all N, although it tells me it is DEL or INDEL or something else. Is this normal?

Thank you a lot in advance for your help!

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jammywwh commented 1 year ago

why "N" not "A/T/G/C"?