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arq5x / lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery
MIT License
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genome file in bedpe_sort.py #351

Closed nitinra closed 3 years ago

nitinra commented 3 years ago

Hello,

I am trying to sort my bedpe file using the bedpe_sort.

Here is my command: ./bedpe_sort.py -b del.sample.nochr.bedpe -g genome.fasta > del.sample.nochr.posSorted.bedpe However, the resulting file is empty. What format should the genome file be in for the script to run?