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arq5x / lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery
MIT License
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To solve the problem of samtools errors like this ： “samtools view: writing to standard output failed: Broken pipe； samtools view: error closing standard output: -1 ” #365

Closed ghost closed 2 years ago

ghost commented 2 years ago

ERROR OF SMATOOLS ++++++++++++++++++++++++++++++++++++++++++++++++ Calculating insert distributions...
samtools view: writing to standard output failed: Broken pipe
samtools view: error closing standard output: -1
Library read groups: id
Library read length: 150
[E::bgzf_flush] File write failed (wrong size)
samtools view: writing to standard output failed: Broken pipe
[E::bgzf_close] File write failed
samtools view: error closing standard output: -1
++++++++++++++++++++++++++++++++++++++++++++++ RESOVE

Use the samtools old version 0.1.19 or 0.1.18 can solve this error.