Hi!When i check the smoove result. I find the DUP length is so large! I don't know why!
Could somebody HELP me!
chr1LG6 13106184 1330202 N <DUP> 23.44 . SVTYPE=DUP;SVLEN=251422240;END=264528424;STRANDS=-+:242;CIPOS=-2,2;CIEND=-2,2;CIPOS95=0,0;CIEND95=0,0;SU=242;PE=0;SR=242;SNAME=JI1539:9601,JI1093:5324,JI1980:3252,JI2348:2994,JI0058:2905,JI0328:7438,JI0015:4584,JI2083:6297,JI1092:5342,JI1794:5544,JI0083:3926,JI1094:5078,JI1088:5669,JI2517:7324,JI1491:5591,JI0132:5445,JI2548:5525,JI2350:5435,JI1585:4140,JI2530:6907,JI1587:3901,JI3511:4328,JI1313:4199,JI3604:3388,JI0932:5457,JI1542:7941,JI1469:5915,JI3148:5486,JI1132:3599,JI3159:5834,JI1626:3375,JI3157:5419,JI1395:3143,JI2115:5358,JI2698:6670,JI3156:5585,JI0554:3308,JI1084:3914,JI0268:3841;ALG=PROD;GCF=0.309327 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB:DHFC:DHFFC:DHBFC 0/1:23:23.44:-4,-2,-4:53:46:6:45:5:28:2:0:17:2:0.1:0.764706:0.8125:0.764706
Thank you very much!
Hi!When i check the smoove result. I find the DUP length is so large! I don't know why! Could somebody HELP me!
chr1LG6 13106184 1330202 N <DUP> 23.44 . SVTYPE=DUP;SVLEN=251422240;END=264528424;STRANDS=-+:242;CIPOS=-2,2;CIEND=-2,2;CIPOS95=0,0;CIEND95=0,0;SU=242;PE=0;SR=242;SNAME=JI1539:9601,JI1093:5324,JI1980:3252,JI2348:2994,JI0058:2905,JI0328:7438,JI0015:4584,JI2083:6297,JI1092:5342,JI1794:5544,JI0083:3926,JI1094:5078,JI1088:5669,JI2517:7324,JI1491:5591,JI0132:5445,JI2548:5525,JI2350:5435,JI1585:4140,JI2530:6907,JI1587:3901,JI3511:4328,JI1313:4199,JI3604:3388,JI0932:5457,JI1542:7941,JI1469:5915,JI3148:5486,JI1132:3599,JI3159:5834,JI1626:3375,JI3157:5419,JI1395:3143,JI2115:5358,JI2698:6670,JI3156:5585,JI0554:3308,JI1084:3914,JI0268:3841;ALG=PROD;GCF=0.309327 GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB:DHFC:DHFFC:DHBFC 0/1:23:23.44:-4,-2,-4:53:46:6:45:5:28:2:0:17:2:0.1:0.764706:0.8125:0.764706Thank you very much!