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arq5x / lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery
MIT License
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File "/ME/alignment/lumpy-sv//scripts/bamkit/bamlibs.py", line 61 print ','.join(lib_rg[lib]) ^ SyntaxError: invalid syntax #387

Open 1580542426 opened 1 year ago

1580542426 commented 1 year ago

/ME4012_Vol0002/Ahome_Dir/hechuanmeng/SY_genome/alignment/lumpy-sv/bin/lumpyexpress -B SYXXF.bam -S SYXXF.splitters.bam -D SYXXF.discordants.bam -o all.sv.lumpy.vcf
Sourcing executables from /ME4012_Vol0002/Ahome_Dir/hechuanmeng/SY_genome/alignment/lumpy-sv/bin/lumpyexpress.config ...

Checking for required python modules (/ME4012_Vol0002/Ahome_Dir/hechuanmeng/miniconda3/bin/python)...

:1: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses :1: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses File "/ME4012_Vol0002/Ahome_Dir/hechuanmeng/SY_genome/alignment/lumpy-sv//scripts/bamkit/bamlibs.py", line 61 print ','.join(lib_rg[lib]) ^ SyntaxError: invalid syntax
RADIOMUMM commented 1 year ago

I meet the same issue, how to fix it