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arq5x / lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery
MIT License
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Lumpyexpress produces zero INS and CNV #392

Open changhan1110 opened 1 year ago

changhan1110 commented 1 year ago

Hi.

I ran lumpyexpress with my bam file using default options.

But weirdly I got a vcf file that has only DEL, DUP, INV BND but no INS nor CNV.

20230704_163549

Could anyone help me understand this result?

Thanks, Changhan

jackzhong1995 commented 1 year ago

image