run lumpy without speedseq

arq5x / lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery

MIT License

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run lumpy without speedseq #396

Open RafigaM opened 2 months ago

RafigaM commented 2 months ago

Hi. I want to run lumpy on HPC cluster but do not have speedseq installed. How could I run lumpy with bam files I already have from bwa-mem alignment? Thank you in advance. Looking forward to the answering from you.