how are the options '-m', '-mw' and '-msw' defined?

arq5x / lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery

MIT License

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how are the options '-m', '-mw' and '-msw' defined? #398

Open yqlan opened 3 months ago

yqlan commented 3 months ago

how are the '-m' (minimum sample weight for a call), '-mw' (minimum weight across all samples for a call) and '-msw' (minimum per-sample weight for a call) defined?

I think I need to change these parameters for samples with different sequencing depth.