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arq5x / poretools

a toolkit for working with Oxford nanopore data
MIT License
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poretools (0.6.0 ) libhdf5.so.6: cannot open shared object file: No such file or directory #102

Open Wang-Jing-NZ opened 8 years ago

Wang-Jing-NZ commented 8 years ago

I am running poretools (0.6.0) on Ubuntu 14.04 and the following error msg:

Traceback (most recent call last):
  File "/usr/local/bin/poretools", line 9, in <module>
    load_entry_point('poretools==0.6.0', 'console_scripts', 'poretools')()
  File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 351, in load_entry_point
    return get_distribution(dist).load_entry_point(group, name)
  File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 2363, in load_entry_point
    return ep.load()
  File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 2088, in load
    entry = __import__(self.module_name, globals(),globals(), ['__name__'])
  File "/usr/local/lib/python2.7/dist-packages/poretools-0.6.0-py2.7.egg/poretools/__init__.py", line 4, in <module>
    from Fast5File import *
  File "/usr/local/lib/python2.7/dist-packages/poretools-0.6.0-py2.7.egg/poretools/Fast5File.py", line 6, in <module>
    import h5py
  File "/usr/local/lib/python2.7/dist-packages/h5py-2.4.0-py2.7-linux-x86_64.egg/h5py/__init__.py", line 10, in <module>
    from h5py import _errors
ImportError: libhdf5.so.6: cannot open shared object file: No such file or directory

tried to locate libhdf5.so.6 and find 

 /usr/lib/x86_64-linux-gnu/libhdf5.so.7
 /usr/lib/x86_64-linux-gnu/libhdf5.so.7.0.0

Can you please help me solve this issue? Many thanks,

Wang-Jing-NZ commented 7 years ago

hmm, can someone point out a direction please?

Cheers

AhmedAbdelfattah commented 7 years ago

I have the same issue, did you or anyone else solved this problem? Thanks