I have a directory A and within it symbolic links for data directories B & C, both of which contain the standard fast5 output directories. Running poretools fastq --type all A/ doesn't recurse into B or C and doesn't find any of the files.
Running poretools fastq --type all B/ or poretools fastq --type all C/ works fine.
I have a directory A and within it symbolic links for data directories B & C, both of which contain the standard fast5 output directories. Running
poretools fastq --type all A/doesn't recurse into B or C and doesn't find any of the files.Running
poretools fastq --type all B/orporetools fastq --type all C/works fine.