Lucioric2000
commented
8 months ago Hello. Didn't your queue management system kill the process due to resource overloading?
Lucio
De: preethib91 @.> Enviado: jueves, 11 de enero de 2024 13:26 Para: arq5x/poretools @.> Cc: Subscribed @.***> Asunto: [arq5x/poretools] ARG_OAP raise CalledProcessError (Issue #192)
I try to run ARG_OAP for meta-genomic shotgun sequencing data. I am getting this following error.
raise CalledProcessError(retcode, process.args, subprocess.CalledProcessError: Command '['blastn', '-db', 'sample16.1.fasta', '-query', 'output/extracted.fa', '-out', 'output/blastout.txt', '-outfmt', '6 qseqid sseqid pident length qlen slen evalue bitscore', '-evalue', '1e-07', '-max_target_seqs', '5', '-num_threads', '8', '-mt_mode', '1']' died with <Signals.SIGKILL: 9>.
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I try to run ARG_OAP for meta-genomic shotgun sequencing data. I am getting this following error.
raise CalledProcessError(retcode, process.args, subprocess.CalledProcessError: Command '['blastn', '-db', 'sample16.1.fasta', '-query', 'output/extracted.fa', '-out', 'output/blastout.txt', '-outfmt', '6 qseqid sseqid pident length qlen slen evalue bitscore', '-evalue', '1e-07', '-max_target_seqs', '5', '-num_threads', '8', '-mt_mode', '1']' died with <Signals.SIGKILL: 9>.