select different basecall_1D_00X sets for fastq/fasta export

arq5x / poretools

a toolkit for working with Oxford nanopore data

MIT License

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select different basecall_1D_00X sets for fastq/fasta export #99

Closed steichten closed 8 years ago

steichten commented 8 years ago

With local basecalling as well as remote being commonplace, it is possible to develop fast5 files that contain basecalls from both methods (Basecall_1D_000 and Basecall_1D_001) or more in the future. Would be nice to specify which to extract from a set of fast5 files.

Might be in here already, but I cannot find anything regarding it.

nickloman commented 8 years ago

Yes it is possible, the --group parameter permits selection of alternative groups, for some subcommands such as 'fasta' and 'fastq'.