arsenij-ust / cbpManager

Generate, manage and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics.
https://arsenij-ust.github.io/cbpManager/
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Installation Isssue #22

Open PALLAVISmohanty opened 2 years ago

PALLAVISmohanty commented 2 years ago

sessionInfo() R version 4.1.2 (2021-11-01) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19043)

Matrix products: default

locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
system code page: 65001

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] shiny_1.7.1

loaded via a namespace (and not attached): [1] reticulate_1.24 cbpManager_1.2.2 tidyselect_1.1.2
[4] bslib_0.3.1 purrr_0.3.4 pander_0.6.4
[7] lattice_0.20-45 basilisk.utils_1.6.0 vctrs_0.3.8
[10] generics_0.1.2 htmltools_0.5.2 rintrojs_0.3.0
[13] utf8_1.2.2 rlang_1.0.2 pillar_1.7.0
[16] later_1.3.0 jquerylib_0.1.4 glue_1.6.2
[19] bit64_4.0.5 lifecycle_1.0.1 plyr_1.8.6
[22] htmlwidgets_1.5.4 tzdb_0.2.0 fastmap_1.1.0
[25] httpuv_1.6.5 parallel_4.1.2 fansi_1.0.2
[28] Rcpp_1.0.8 xtable_1.8-4 promises_1.2.0.1
[31] DT_0.21 filelock_1.0.2 BiocManager_1.30.16
[34] cachem_1.0.6 vroom_1.5.7 jsonlite_1.8.0
[37] mime_0.12 bit_4.0.4 rapportools_1.0
[40] basilisk_1.6.0 dir.expiry_1.2.0 png_0.1-7
[43] digest_0.6.29 dplyr_1.0.8 rprojroot_2.0.2
[46] shinycssloaders_1.0.0 grid_4.1.2 here_1.0.1
[49] cli_3.2.0 tools_4.1.2 magrittr_2.0.2
[52] sass_0.4.0 tibble_3.1.6 crayon_1.5.0
[55] pkgconfig_2.0.3 ellipsis_0.3.2 Matrix_1.3-4
[58] rsconnect_0.8.25 shinyBS_0.61 shinydashboard_0.7.2 [61] R6_2.5.1 compiler_4.1.2 image

arsenij-ust commented 2 years ago

Hi @PALLAVISmohanty , thanks for opening this issue. Unfortunately, this error has been occurring recently and we are in the process of finding the cause. This Error seems to relate to https://github.com/ramnathv/htmlwidgets/issues/320

There are several alternatives to install cbpManager:

  1. remotes::install_github("arsenij-ust/cbpManager", ref = "master").
  2. BiocManager::install("cbpManager") (Bioconductor)
  3. use the docker version of cbpManager, which you can find here cbpmanager.deploy

Please let me know, if this solves your problem.