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arsenij-ust / cbpManager

Generate, manage and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics.
https://arsenij-ust.github.io/cbpManager/
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Unable to Launch cbpManager #25

Open nicholaschevalier9 opened 1 year ago

nicholaschevalier9 commented 1 year ago

Hello,

I just downloaded cbpManager and am trying to launch via RStudio but keep getting error message: Listening on http://127.0.0.1:3689 Warning: Error in value[[3L]]: Couldn't normalize path in addResourcePath, with arguments: prefix = 'AdminLTE-2.0.6'; directoryPath = 'F:/biocbuild/bbs-3.17-bioc/R/library/shinydashboard/AdminLTE'

image

I checked and everything is valid

BiocManager::valid() 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cran.rstudio.com/ [1] TRUE

arsenij-ust commented 1 year ago

Hi @nicholaschevalier9 , unfortunately, the Bioc version is a bit behind the development. Please try to install cbpManager directly from the github repo. 

library(devtools)
install_github("arsenij-ust/cbpManager")

In the meantime, I will try to update the Bioconductor version.

Best regards