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arshajii
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ema
Fast & accurate alignment of barcoded short-reads
http://ema.csail.mit.edu
MIT License
32
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Incorrect template length output
#54
pdimens
opened
4 months ago
0
Barcodes not encoded/decoded correctly for haplotag reads.
#53
pontushojer
opened
1 year ago
0
Not all input reads are included in `ema align` output
#52
pontushojer
opened
1 year ago
0
Enable mapping TELL-Seq and DBS linked reads
#51
pontushojer
closed
1 year ago
9
Create create_source_release.yml
#50
pdimens
closed
1 year ago
0
`ema align` silently fails with `[noeol]` FASTA files
#49
taprs
closed
1 year ago
1
add haplotagging info to readme
#48
pdimens
closed
1 year ago
0
Haplotag
#47
pdimens
closed
1 year ago
0
EMA split-read handling
#46
pdimens
opened
1 year ago
0
Can it used for read of length 500bp ?
#45
volcano1998
opened
1 year ago
0
ema align errors
#44
arka-pal
opened
2 years ago
0
What's the meaning of density probs?
#43
ZhangZhenmiao
opened
2 years ago
0
Increase array size to allow longer FASTQ read names
#42
pontushojer
closed
1 year ago
0
Add support for haplotag reads
#41
EdHarry
closed
1 year ago
15
Why is read density optimization off by default?
#40
RNieuwenhuis
opened
3 years ago
0
ema align output SAM parsing error
#39
pontushojer
opened
3 years ago
4
ema-bin-??? and possible preproc failure
#38
michaeljmetzger
opened
4 years ago
14
8 bp whitelist
#37
michaeljmetzger
opened
4 years ago
1
Input and workflow unclear
#36
RNieuwenhuis
opened
4 years ago
6
Platform Flag
#35
Ellis-Anderson
opened
4 years ago
1
How to use "-b" flag?
#34
andreaswallberg
closed
4 years ago
2
ema align core dumped
#33
MaestSi
opened
5 years ago
0
Compilation error
#32
MaestSi
closed
5 years ago
2
reference lenght constraint
#31
lucius81
opened
5 years ago
2
raise MAX_CHROM_NAME_LEN
#30
rchikhi
closed
5 years ago
1
Interpreting read counts
#29
Asutu
closed
4 years ago
1
Option for preprocess and map to write and read gzipped files?
#28
cwhelan
opened
5 years ago
2
Core dump in ema count
#27
DRL
closed
5 years ago
1
10X Long Ranger with EMA BAM
#26
jasmine-alvarez
closed
5 years ago
1
Please add --help and --version options
#25
sjackman
opened
5 years ago
0
Supporting for stLFR reads
#24
YingYa
closed
5 years ago
6
10x bamtofastq with EMA BAM
#23
vladsavelyev
closed
6 years ago
3
Reads mapping to N's in the beginning of a chromosome with 1000genomes BWA indices
#22
vladsavelyev
closed
6 years ago
11
conda installation: "illegal hardware instruction" error
#21
vladsavelyev
closed
6 years ago
2
Replace XC with MI ?
#20
sjackman
closed
6 years ago
4
Test
#19
arshajii
closed
6 years ago
0
make -j fails
#18
sjackman
closed
6 years ago
2
Homebrew / Linuxbrew package of ema
#17
sjackman
closed
6 years ago
3
Variable read size support
#16
arshajii
closed
6 years ago
0
Mapping Longranger basic FASTQ format with BX:Z tag
#15
sjackman
opened
6 years ago
32
Trimming 1bp of R2
#14
vladsavelyev
closed
6 years ago
5
Read length requirements, and error handling
#13
vladsavelyev
closed
6 years ago
11
`ema align` command
#12
vladsavelyev
closed
6 years ago
2
Fast preproc
#11
arshajii
closed
6 years ago
0
Internal dup mark
#10
arshajii
closed
6 years ago
0
Internal duplicate marking
#9
arshajii
closed
6 years ago
1
New preprocessing release
#8
vladsavelyev
closed
6 years ago
6
Picard error in ema_wrapper.sh
#7
vladsavelyev
closed
6 years ago
1
Read group in ema_wrapper.sh
#6
vladsavelyev
closed
6 years ago
10
Error during preproc
#5
vladsavelyev
closed
6 years ago
1
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