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arshajii / lava

LAVA: Lightweight Assignment of Variant Alleles
lava.csail.mit.edu
MIT License
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Does this handle paired-end fastqs #1

Closed alanhoyle closed 7 years ago

alanhoyle commented 7 years ago

As far as I can tell, it only seems to handle a single fastq at a time. Can this handle paired-end sequencing?

arshajii commented 7 years ago

Currently, nothing special is done for paired-end data, but you can use paired-end reads by inputting them all in a single file.