Addresses Issue #41, gnu_getopt allows non-option arguments to be intermingled with option arguments whereas getopt stops processing arguments when a non option is found.
Coverage decreased (-0.1%) to 92.107% when pulling f2e6f1a71cf7e8e71e9e5691d160a9f9dc8d77d7 on Plloi:b-41 into 22b671e15f0c8acdaed8594d0a8ae9f7c3303452 on arthepsy:master.
Addresses Issue #41, gnu_getopt allows non-option arguments to be intermingled with option arguments whereas getopt stops processing arguments when a non option is found.