artic-network / artic-ncov2019

ARTIC nanopore protocol for nCoV2019 novel coronavirus
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Conda environment dependency issues with new versions of Medaka #101

Open nenadmacesic opened 1 year ago

nenadmacesic commented 1 year ago

Hi,

I have tried to run the pipeline using Medaka. We used Guppy v6.3.5 in 'super' mode for basecalling and unfortunately the Medaka version that comes with the Artic conda environment (v1.0.3) does not have the relevant model.

I tried to update Medaka to the newest version using following command: mamba update medaka=1.7.2

And ran into this error: `Encountered problems while solving:

Any advice about how to resolve these dependency issues is much appreciated!