Closed jameshadfield closed 4 years ago
I was running into this whilst testing the fieldbioinformatics pipeline on OSX
The pipeline requires nanopolish features that aren't available in 0.11.3 - so your first option is the best solution currently.
I had been ignoring this and just installing nanopolish from source whilst testing, but we are going to need a fix. Any idea what the issue is with getting the latest nanopolish for mac into conda? I'm guessing there is one! I can have a stab at it next week maybe
@jts looked at this a bit, not sure how far he got?
Not very far unfortunately - the conda maintainers changed the nanopolish build script for 0.12.0 so this will take a bit of work. I can help but won't have a ton of time today
Does anyone know what version of MacOS conda builds against? I'm on 10.15.3 and hitting this header error with the conda version of gcc (4.8):
Is it 10.9?
for those that want to see me struggle, I'm trying to fix this here: https://github.com/bioconda/bioconda-recipes/pull/21282
This will be fixed by bioconda/bioconda-recipes#21330.
This is great @jmarshall, thanks so much for fixing this.
Thanks @jmarshall - that's brilliant! And thank you too @jts
I believe this is now fixed.
We currently require
nanopolish=0.12.5
but on MacOS the most recently available version is 0.11.3.Unsure what the best solution is:
nanopolish=0.11.3|0.12.5
)