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artic-network / artic-ncov2019

ARTIC nanopore protocol for nCoV2019 novel coronavirus
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No variant.tab output #23

Closed deearahman closed 3 years ago

deearahman commented 4 years ago

I don’t have the variant output. Was there any step that I missed?

garfinjm commented 4 years ago

Having the same issue here. No samplename.variants.tab output for any of my samples. Everything else looks OK though.

vehuardo commented 4 years ago

Same here!

will-rowe commented 3 years ago

Sorry - just come across this.

Looks like this output file got silently dropped from the output during transition from v1.0.0 -> v1.1.0-rc. All information is available in the VCF.

We will remove this from the SOP for now. Please raise an issue over on the artic pipeline if you want this adding back in.