Hello,
Whenever i am running the minION pipeline command I run into an error which I am unable to decipher and, hence, troubleshoot.
In the following, please find the exact error I am getting:
Traceback (most recent call last):
File "/home/bio/miniconda3/envs/artic-ncov2019/bin/artic", line 10, in
sys.exit(main())
File "/home/bio/miniconda3/envs/artic-ncov2019/lib/python3.6/site-packages/artic/pipeline.py", line 216, in main
args.func(parser, args)
File "/home/bio/miniconda3/envs/artic-ncov2019/lib/python3.6/site-packages/artic/pipeline.py", line 35, in run_subtool
submodule.run(parser, args)
File "/home/bio/miniconda3/envs/artic-ncov2019/lib/python3.6/site-packages/artic/minion.py", line 23, in run
scheme_name, scheme_version = args.scheme.split('/')
ValueError: too many values to unpack (expected 2)
N.B: Please note that the artic environment was getting stuck at solving environment with the 64-bit python 3.6 version of miniconda. Therefore it was installed via the latest version of miniconda3 (with Py3.8). I am unsure if this is contributing to the error. Also, please do excuse the hectic directory arrangement in the command.
Hello, Whenever i am running the minION pipeline command I run into an error which I am unable to decipher and, hence, troubleshoot. In the following, please find the exact error I am getting:
Command Used:
Error message:
N.B: Please note that the artic environment was getting stuck at solving environment with the 64-bit python 3.6 version of miniconda. Therefore it was installed via the latest version of miniconda3 (with Py3.8). I am unsure if this is contributing to the error. Also, please do excuse the hectic directory arrangement in the command.
Thank you very much. Sincerely, Georgi Merhi.