Using customized 'Primer' for ONT sequencing data

artic-network / artic-ncov2019

ARTIC nanopore protocol for nCoV2019 novel coronavirus

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Using customized 'Primer' for ONT sequencing data #68

Closed chantisakee closed 3 years ago

chantisakee commented 3 years ago

Hi,

I have a question about optimizing pipeline using 'customised primer'. According to 'Run the MinION pipeline' step, what kind of data should I have to put my customized primer in order to replace 'nCoV-2019/V3' parameter.

Thank you in advance, Chantisa

chantisakee commented 3 years ago

I do actually found how to create primer scheme for our own pipeline in document.

:] thanks

deearahman commented 3 years ago

I do actually found how to create primer scheme for our own pipeline in document.

:] thanks

Hi,

Do you mind sharing how this is sorted out? I am trying out V4 but not sure how to set up for the artic analysis.

Thanks