search

artic-network / artic-ncov2019

ARTIC nanopore protocol for nCoV2019 novel coronavirus
Creative Commons Attribution 4.0 International
168 stars 166 forks source link

Error running nanopolish #98

Open jidiaz opened 1 year ago

jidiaz commented 1 year ago

Hi dear development team, hoping everything is ok.

I open this issue due to the error that I obtained running the Artic workflow for my Nanopore dataset.

The printed error is:

Processing 15 files in /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/fastq_pass/barcode01 /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/genomes_barcode01.fastq 53048 Running: nanopolish index -s /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/sequencing_summary_FAQ95341_0ad5ced2.txt -d /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/ /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/genomes_barcode01.fastq [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/ [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode02 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode37 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode29 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode17 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode71 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode03 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode35 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode19 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode78 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode89 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode23 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode09 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode45 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode08 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode90 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode93 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode24 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode27 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode12 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode38 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode49 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode50 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode58 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode86 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode64 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode95 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode76 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode70 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode80 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode42 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode68 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode69 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode79 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode32 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode41 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode26 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode56 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode16 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode96 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode54 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode51 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode52 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode21 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode47 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode34 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode65 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode39 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode40 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode81 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode05 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode20 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode11 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode14 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode74 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode61 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode30 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode91 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode75 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode10 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode94 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode72 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode77 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode25 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode63 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/unclassified [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode36 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode53 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode59 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode22 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode88 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode48 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode15 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode55 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode04 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode07 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode84 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode66 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode28 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode44 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode46 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode13 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode73 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode67 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode57 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode01 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode60 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode33 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode18 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode31 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode82 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode06 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode43 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode62 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode85 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode87 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode92 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_fail/barcode83 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode02 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode37 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode29 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode17 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode71 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode03 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode35 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode19 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode78 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode89 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode23 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode09 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode45 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode08 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode90 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode93 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode24 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode27 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode12 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode38 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode49 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode50 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode58 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode86 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode64 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode95 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode76 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode70 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode80 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode42 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode68 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode69 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode79 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode32 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode41 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode26 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode56 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode16 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode96 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode54 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode51 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode52 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode21 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode47 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode34 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode65 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode39 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode40 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode81 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode05 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode20 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode11 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode14 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode74 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode61 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode30 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode91 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode75 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode10 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode94 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode72 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode77 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode25 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode63 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/unclassified [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode36 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode53 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode59 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode22 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode88 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode48 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode15 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode55 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode04 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode07 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode84 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode66 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode28 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode44 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode46 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode13 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode73 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode67 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode57 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode01 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode60 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode33 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode18 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode31 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode82 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode06 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode43 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode62 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode87 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode92 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fast5_pass/barcode83 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//other_reports [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//genomes [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode02 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode37 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode29 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode17 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode71 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode03 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode35 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode19 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode78 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode89 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode23 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode09 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode45 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode08 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode90 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode93 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode24 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode27 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode12 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode38 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode49 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode50 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode58 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode86 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode64 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode95 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode76 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode70 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode80 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode42 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode68 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode69 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode79 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode32 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode41 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode26 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode56 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode16 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode96 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode54 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode51 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode52 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode21 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode47 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode34 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode65 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode39 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode40 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode81 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode05 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode20 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode11 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode14 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode74 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode61 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode30 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode91 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode75 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode10 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode94 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode72 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode77 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode25 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode63 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/unclassified [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode36 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode53 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode59 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode22 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode88 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode48 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode15 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode55 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode04 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode07 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode84 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode66 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode28 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode44 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode46 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode13 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode73 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode67 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode57 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode01 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode60 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode33 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode18 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode31 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode82 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode06 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode43 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode62 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode85 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode87 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode92 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_fail/barcode83 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode02 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode37 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode29 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode17 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode71 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode03 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode35 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode19 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode78 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode89 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode23 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode09 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode45 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode08 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode90 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode93 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode24 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode27 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode12 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode38 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode49 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode50 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode58 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode86 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode64 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode95 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode76 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode70 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode80 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode42 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode68 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode69 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode79 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode32 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode41 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode26 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode56 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode16 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode96 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode54 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode51 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode52 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode21 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode47 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode34 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode65 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode39 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode40 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode81 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode05 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode20 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode11 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode14 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode74 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode61 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode30 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode91 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode75 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode10 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode94 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode72 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode77 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode25 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode63 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/unclassified [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode36 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode53 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode59 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode22 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode88 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode48 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode15 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode55 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode04 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode07 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode84 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode66 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode28 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode44 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode46 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode13 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode73 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode67 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode57 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode01 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode60 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode33 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode18 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode31 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode82 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode06 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode43 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode62 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode87 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode92 [readdb] indexing /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d//fastq_pass/barcode83 [readdb] num reads: 53048, num reads with path to fast5: 53048 Running: minimap2 -a -x map-ont -t 12 /home/grid/artic-ncov2019/primer_schemes//SARS-CoV-2/V4.1/SARS-CoV-2.reference.fasta /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/genomes_barcode01.fastq | samtools view -bS -F 4 - | samtools sort -o /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.sorted.bam - [M::mm_idx_gen::0.0011.65] collected minimizers [M::mm_idx_gen::0.0023.59] sorted minimizers [M::main::0.0023.57] loaded/built the index for 1 target sequence(s) [M::mm_mapopt_update::0.0023.33] mid_occ = 3 [M::mm_idx_stat] kmer size: 15; skip: 10; is_hpc: 0; #seq: 1 [M::mm_idx_stat::0.0023.16] distinct minimizers: 5587 (99.93% are singletons); average occurrences: 1.004; average spacing: 5.332 [M::worker_pipeline::1.4075.21] mapped 53048 sequences [M::main] Version: 2.17-r941 [M::main] CMD: minimap2 -a -x map-ont -t 12 /home/grid/artic-ncov2019/primer_schemes//SARS-CoV-2/V4.1/SARS-CoV-2.reference.fasta /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/genomes_barcode01.fastq [M::main] Real time: 1.408 sec; CPU: 7.324 sec; Peak RSS: 0.086 GB Running: samtools index /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.sorted.bam Running: align_trim --normalise 200 /home/grid/artic-ncov2019/primer_schemes//SARS-CoV-2/V4.1/SARS-CoV-2.scheme.bed --start --remove-incorrect-pairs --report /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.alignreport.txt < /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.sorted.bam 2> /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.alignreport.er | samtools sort -T /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01 - -o /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.trimmed.rg.sorted.bam Running: align_trim --normalise 200 /home/grid/artic-ncov2019/primer_schemes//SARS-CoV-2/V4.1/SARS-CoV-2.scheme.bed --remove-incorrect-pairs --report /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.alignreport.txt < /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.sorted.bam 2> /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.alignreport.er | samtools sort -T /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01 - -o /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.primertrimmed.rg.sorted.bam Running: samtools index /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.trimmed.rg.sorted.bam Running: samtools index /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.primertrimmed.rg.sorted.bam Running: nanopolish variants --min-flanking-sequence 10 -x 1000000 --progress -t 12 --reads /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/genomes_barcode01.fastq -o /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.1.vcf -b /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.trimmed.rg.sorted.bam -g /home/grid/artic-ncov2019/primer_schemes//SARS-CoV-2/V4.1/SARS-CoV-2.reference.fasta -w "MN908947.3:1-29904" --ploidy 1 -m 0.15 --read-group 1 [post-run summary] total reads: 31246, unparseable: 0, qc fail: 44, could not calibrate: 131, no alignment: 1321, bad fast5: 0 Running: nanopolish variants --min-flanking-sequence 10 -x 1000000 --progress -t 12 --reads /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/genomes_barcode01.fastq -o /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.2.vcf -b /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.trimmed.rg.sorted.bam -g /home/grid/artic-ncov2019/primer_schemes//SARS-CoV-2/V4.1/SARS-CoV-2.reference.fasta -w "MN908947.3:1-29904" --ploidy 1 -m 0.15 --read-group 2 [post-run summary] total reads: 34844, unparseable: 0, qc fail: 43, could not calibrate: 168, no alignment: 1402, bad fast5: 0 Running: artic_vcf_merge /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01 /home/grid/artic-ncov2019/primer_schemes//SARS-CoV-2/V4.1/SARS-CoV-2.scheme.bed 2> /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.primersitereport.txt 1:/data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.1.vcf 2:/data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.2.vcf Command failed:artic_vcf_merge /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01 /home/grid/artic-ncov2019/primer_schemes//SARS-CoV-2/V4.1/SARS-CoV-2.scheme.bed 2> /data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.primersitereport.txt 1:/data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.1.vcf 2:/data/20220809SARSCOV2AH/no_sample/20220809_1905_X4_FAQ95341_e25c3f6d/genomes/barcode01.2.vcf

And reviewing the log file generated after the run I found the next error:

Traceback (most recent call last): File "/home/grid/micromamba/envs/artic-ncov2019/bin/artic_vcf_merge", line 10, in sys.exit(main()) File "/home/grid/micromamba/envs/artic-ncov2019/lib/python3.6/site-packages/artic/vcf_merge.py", line 55, in main vcf_merge(args) File "/home/grid/micromamba/envs/artic-ncov2019/lib/python3.6/site-packages/artic/vcf_merge.py", line 26, in vcf_merge vcf_reader.infos["Pool"] = vcf.parser._Format("Pool", 1, "String", "The pool name") TypeError: new() missing 1 required positional argument: 'type_code'

I'm very confused about this because the process artic_vcf_merge is launched automatically for the program (all parameters are automatically configured).

If you can help me, I'll be thankful.

Thank's in advance.