artic-network / civet

Cluster Investigation & Virus Epidemiology Tool
https://cov-lineages.org/resources/civet.html
GNU General Public License v3.0
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Option to annotate with specified SNPs #102

Closed rambaut closed 3 years ago

rambaut commented 3 years ago

Suggestion for a command line option that requests that particular mutations are pulled out of the sequences and included in tables and as annotations on the tree (by colouring and in details). The SNPs would be specified in Scorpio format (could be an option in Scorpio to allow the specification of mutations on the command line and create a CSV).

aineniamh commented 3 years ago

Done!