issues
search
artic-network
/
civet
Cluster Investigation & Virus Epidemiology Tool
https://cov-lineages.org/resources/civet.html
GNU General Public License v3.0
49
stars
14
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Add data version details into report
#65
rambaut
closed
4 years ago
1
Generate config file
#64
rambaut
closed
4 years ago
0
Custom table headers
#63
ViralVerity
closed
4 years ago
0
De-duplicate before running
#62
josephhughes
closed
3 years ago
1
New figures
#61
ViralVerity
closed
4 years ago
0
Error: Missing input files for rule make_snp_figure
#60
josephhughes
closed
4 years ago
5
New figure merge
#59
ViralVerity
closed
4 years ago
0
Update civet_template.pmd
#58
delfair
closed
4 years ago
0
Size collapsed node dots in tree by number of sequences
#57
ViralVerity
closed
4 years ago
0
Dev s
#56
SRooke
closed
4 years ago
1
Dev s
#55
SRooke
closed
4 years ago
0
snp difference to closest cog
#54
aineniamh
closed
4 years ago
0
indicate in tree vs in climb difference
#53
aineniamh
closed
4 years ago
0
new-lineage-detection-based-on-date
#52
aineniamh
closed
4 years ago
0
big-tree-render-context
#51
aineniamh
closed
4 years ago
0
distance-based-intro
#50
aineniamh
closed
3 years ago
0
Dev s
#49
aineniamh
closed
4 years ago
0
Revert "Implementation of region-scale lineage analyses"
#48
SRooke
closed
4 years ago
0
Implementation of region-scale lineage analyses
#47
SRooke
closed
4 years ago
0
Tree branch
#46
ViralVerity
closed
4 years ago
0
add option to include custom elements in tree labels
#45
ViralVerity
closed
4 years ago
0
Make legend multi-row if colourby has lots of values
#44
ViralVerity
closed
3 years ago
0
Add customisable preamble to report
#43
ViralVerity
closed
4 years ago
0
Formatting of error text
#42
ViralVerity
closed
4 years ago
0
tree viz errors out
#41
aineniamh
closed
4 years ago
0
Round percentages to sensible decimal place on report
#40
aineniamh
closed
4 years ago
0
Cog report
#39
ViralVerity
closed
4 years ago
0
Regional lineage mapping
#38
SRooke
closed
4 years ago
0
updated title
#37
ViralVerity
closed
4 years ago
0
Dev
#36
ViralVerity
closed
4 years ago
0
Regional lineage assignment basis
#35
SRooke
closed
4 years ago
0
Pdf branch
#34
aineniamh
closed
4 years ago
0
Add default header
#33
ViralVerity
closed
4 years ago
0
Requests tabulate - not installed as dependency
#32
SRooke
closed
4 years ago
0
Pdf branch
#31
ViralVerity
closed
4 years ago
0
Simplify climb access
#30
rambaut
closed
4 years ago
0
rsync breaks if data dir has space in path
#29
aineniamh
closed
4 years ago
0
Possible enhancement: details of the counts for for each country when sequences are identical
#28
josephhughes
closed
4 years ago
2
The rule iqtree_catchment crashes when input alignment is not properly aligned
#27
thanhleviet
closed
4 years ago
2
Running on climb
#26
josephhughes
closed
4 years ago
4
Hangs when resetting
#25
josephhughes
closed
4 years ago
0
sequenceID exists but no duplicates in input
#24
josephhughes
closed
4 years ago
3
Names with pipes in throw off table rendering
#23
ViralVerity
closed
4 years ago
0
Speed up minimap2 with threads
#22
thanhleviet
closed
4 years ago
1
Incorrect display of percentage of Ns in report file
#21
thanhleviet
closed
4 years ago
1
Shebang line missing in executable python files
#20
thanhleviet
closed
4 years ago
1
Custom headers for md report for each institute
#19
aineniamh
closed
4 years ago
0
Report if sequences were not provided for an id not in COG-UK
#18
aineniamh
closed
4 years ago
0
Test data
#17
josephhughes
closed
4 years ago
11
if no fasta supplied, breaks
#16
aineniamh
closed
4 years ago
0
Previous
Next