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artic-network
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fieldbioinformatics
The ARTIC field bioinformatics pipeline
MIT License
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Updating CLI docs
#25
Closed
will-rowe
closed
4 years ago
will-rowe
commented
4 years ago
This PR:
removes an unused option from guppyplex
updates the documentation for the commands
combines the variant validators for nanopolish and medaka into one module
enables command line configuration of the variant validator to specify which minion workflow to use and how many datasets to validate against
adds another 2 datasets for variant validation
removes a pytest dependency for remote check
updates travis, gitignore etc.
moves an old R script to deprecated
updates nanopolish dep in env to 0.13.0
This PR: