patching primer scheme handling - Githubissues

artic-network / fieldbioinformatics

The ARTIC field bioinformatics pipeline

MIT License

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patching primer scheme handling #44

Closed will-rowe closed 4 years ago

will-rowe commented 4 years ago

As pointed out by @m-bull, primer-schemes where alts don't have a non-alt partner (such as artic V2) don't get handled properly. This PR:

fixes the primer parsing for the previously described case
adds a pre-histogram binning sort to the plotting script, which should stop the monotonic sort error that crops up for unsorted primer schemes
fixes a tqdm import error seen by conda during the pytests
applies a version patch