artic gather now builds nanopolish index files for the full read set, using the summary files it detects
artic demultiplex will build an index for barcoded fastqs, using the master .readdb file to avoid lengthy re-indexing
This improves the pipeline by reducing some steps (nanopolish index does not need to be run separately) and removes the need to pass nanopolish-reads-file to artic minion.
artic gather
now builds nanopolish index files for the full read set, using the summary files it detectsartic demultiplex
will build an index for barcoded fastqs, using the master .readdb file to avoid lengthy re-indexingThis improves the pipeline by reducing some steps (
nanopolish index
does not need to be run separately) and removes the need to passnanopolish-reads-file
toartic minion
.