Closed will-rowe closed 4 years ago
This pull request adds:
The basic functional test runs through the pipeline as in the documentation. It uses a small example dataset and the output is checked for a consensus fasta file.
Current caveats:
./test-runner.sh [nanopolish|medaka]
) but the decision for just using medaka in Travis was mainly due to the increased runtime needed for nanopolishartic minion
error handling needs tweaking to report sys command failures
Now using the Conda env to manage travis