artic-network / fieldbioinformatics

The ARTIC field bioinformatics pipeline
MIT License
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quality Filter for pass.vcf #89

Open pratibha-kadam opened 2 years ago

pratibha-kadam commented 2 years ago

Hello, I am using artic pipeline and as it filters the variants into pass and fail .vcf. can anyone tell me what filters are applied on merged.vcf and what is the cutoff for quality of variants and for depth. Please let me know as soon as possible.

Thanx in advanced.