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artic-network / fieldbioinformatics

The ARTIC field bioinformatics pipeline
MIT License
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V1200/midnight primer scheme #98

Open rebeelouise opened 2 years ago

rebeelouise commented 2 years ago

Hi guys,

Been testing out the midnight primers in our lab which look good when running the epi2me analysis, however, I am now at the command line and it is saying it does not recognise the V1200 scheme... I have added this to the directory with the other schemes locally. Is there a reason why these aren't included in the pipeline? Should I be using a different pipeline?

Thanks :)

BioWilko commented 2 years ago

Hi Rebee

Sorry for the late reply but on the off chance that you're still having this problem if you follow the directory structure described in this comment it should be able to find the scheme.

Sam W