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artic-network / polecat

GNU General Public License v3.0
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Python wrapper needs updating for the cluster ids #1

Open rambaut opened 3 years ago

rambaut commented 3 years ago

The output of jclusterfunk now emits a column node_id instead of node_number and parent_id instead of parent_number


'node_number'
  File "/cephfs/covid/bham/climb-covid19-ellabyn/.conda/envs/polecat/lib/python3.9/site-packages/polecat-1.0-py3.9.egg/polecat/scripts/Snakefile", line 68, in __rule_process_clusters
  File "/cephfs/covid/bham/climb-covid19-ellabyn/.conda/envs/polecat/lib/python3.9/concurrent/futures/thread.py", line 52, in run
Exiting because a job execution failed. Look above for error message
Exiting because a job execution failed. Look above for error message```
rambaut commented 3 years ago

Updated code. Needs testing.