Cluster-friendly implementation of bwa index to automatically distribute files to nodes

arumugamlab / MIntO

Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data

MIT License

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Cluster-friendly implementation of bwa index to automatically distribute files to nodes #65

Closed microbiomix closed 1 month ago

jszarvas commented 1 month ago

I think there also needs to be a snakemake rule to remove the distributed BWA indeces from the local disks after all the alignments are made. Maybe launched from data_integration.smk just to make sure all the necessary jobs were run.