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arundurvasula / angsd-wrapper

A project for extending ANGSD
MIT License
8 stars 12 forks source link

stuff we want #58

Closed rossibarra closed 9 years ago

rossibarra commented 9 years ago

Fst Make ancestral genome Call genotypes Thetas plotting thetas SFS plot sfs fst plotting fst estimate inbreeding admixture plot admixture PCA plot pca ABBA-BABBA plot ABBA-BABBA ?

arundurvasula commented 9 years ago

Progress as of now:

[x]Fst [ ]plotting fst [ ]Make ancestral genome (Tyler) [ ]Call genotypes [x]Thetas [x]plotting thetas [x]SFS [x]plot sfs [ ]estimate inbreeding (Tyler) [x]admixture [x]plot admixture [ ]PCA [ ]plot pca [x]ABBA-BABA [ ]plot ABBA-BABA

8/15 done!

rossibarra commented 9 years ago

Me want to see abba graphs. On Mon, 9 Mar 2015 at 17:40 Arun Durvasula notifications@github.com wrote:

Progress as of now:

[x]Fst [ ]plotting fst [ ]Make ancestral genome (Tyler) [ ]Call genotypes [x]Thetas [x]plotting thetas [x]SFS [ ]plot sfs [ ]estimate inbreeding (Tyler) [x]admixture [ ]plot admixture [ ]PCA [ ]plot pca [x]ABBA-BABA [x]plot ABBA-BABA

7/15 done!

— Reply to this email directly or view it on GitHub https://github.com/arundurvasula/angsd-wrapper/issues/58#issuecomment-77974929 .

arundurvasula commented 9 years ago

Crap didn't mean to mark plot ABBA-BABA as done, but I'll get it done next since I marked it.

arundurvasula commented 9 years ago

[x]Fst [ ]plotting fst [ ]Make ancestral genome (Arun) [ ]Call genotypes [x]Thetas [x]plotting thetas [x]SFS [x]plot sfs [x]estimate inbreeding (Tyler) [x]admixture [x]plot admixture [ ]PCA [ ]plot pca [x]ABBA-BABA [x]plot ABBA-BABA

arundurvasula commented 9 years ago

[x]Fst [ ]plotting fst (Tyler) [x]Make ancestral genome [ ]Call genotypes (Sid/Tyler) [x]Thetas [x]plotting thetas [x]SFS [x]plot sfs [x]estimate inbreeding [x]admixture [x]plot admixture [x]PCA [x]plot pca (Arun) [x]ABBA-BABA [x]plot ABBA-BABA

arundurvasula commented 9 years ago

Genotypes added in last commit.