Testing

[HenrietteCapel]

Testing

• Create example CSV input files: instantaneous and continuous doses; different intervals; different dosis
• Create example parameters; 0-1-2 compartments; absorption; rhs parameter.
• Testing function Class Protocol; test converting to pandas dataframe
• Testing function Class Solution; test rhs, test solver, test solve_for_list
• Check coverage of testing
• Continuous integration (GitHub Actions): multiple operating systems; multiple python versions
• Include defensive programming in code
• Better Code Hub
• Read the Docs

[HenrietteCapel]

Add another test to "test_parameters.txt" including only one compartment but providing parameters for multiple compartments. The code should handle this by not including the compartment. @arunraja-hub

[jiayuanz3]

Add "test_models.py" which is a unit test structure. Need tests cases to be put in @pytest.mark.parametrize([ ]) to run test cases. 'test_read_docs' checks if all instances in the dataframe are numerical; 'test_rhs' checks if the length of the output is desired; 'test_solver' checks if the ode solver gives correct number of outputs (solver.y should be 1/2/3 dimension depends on C/P1/P2); 'test_solver_for_list' checks if the output represents correct number of doses.

[HenrietteCapel]

Problems with:

• unit testing
• Read the Docs