arvestad / jprime

Probabilistic Inference of Molecular Evolution
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Failed to produce valid pruned tree within max allowed attempts #2

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago
What steps will reproduce the problem?
1. java -jar ./jprime-0.3.3.jar GuestTreeGen -min 5 -max 30 
"((((((A:5,B:5):8,(C:10,D:10):3):31,E:44):11,F:55):7,G:62):1,((H:31,I:31):12,J:4
3):20);" 0.01 0.02 0 test 
2.
3.

What is the expected output? What do you see instead?
No output

What version of the product are you using? On what operating system?
Mac OS10.5.8

Please provide any additional information below.

Original issue reported on code.google.com by franalme...@gmail.com on 20 Aug 2013 at 3:40

GoogleCodeExporter commented 9 years ago
I'll handle this one.

Original comment by joel.sjo...@gmail.com on 20 Nov 2013 at 11:32

GoogleCodeExporter commented 9 years ago
Null stem length on host tree caused issue. Now set to 0 automatically.

Original comment by joel.sjo...@gmail.com on 20 Nov 2013 at 11:34

GoogleCodeExporter commented 9 years ago

Original comment by joel.sjo...@gmail.com on 20 Nov 2013 at 11:37