OriolAbril
commented
1 year ago I do get this deprecationwarning, but can't reproduce the issue, the plots are generated quite fast.
Deprecation error:
/home/oriol/bin/miniconda3/envs/py311-test/lib/python3.11/site-packages/arviz/utils.py:184: NumbaDeprecationWarning: The 'nopython' keyword argument was not supplied to the 'numba.jit' decorator. The implicit default value for this argument is currently False, but it will be changed to True in Numba 0.59.0. See https://numba.readthedocs.io/en/stable/reference/deprecation.html#deprecation-of-object-mode-fall-back-behaviour-when-using-jit for details.
numba_fn = numba.jit(**self.kwargs)(self.function)My env:
❯ conda list
# packages in environment at /home/oriol/bin/miniconda3/envs/py311-test:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
arviz 0.15.1 pypi_0 pypi
bzip2 1.0.8 h7f98852_4 conda-forge
ca-certificates 2023.5.7 hbcca054_0 conda-forge
cachetools 5.3.0 pypi_0 pypi
cloudpickle 2.2.1 pypi_0 pypi
cons 0.4.5 pypi_0 pypi
contourpy 1.0.7 pypi_0 pypi
cycler 0.11.0 pypi_0 pypi
etuples 0.3.8 pypi_0 pypi
fastprogress 1.0.3 pypi_0 pypi
filelock 3.12.0 pypi_0 pypi
fonttools 4.39.4 pypi_0 pypi
h5netcdf 1.1.0 pypi_0 pypi
h5py 3.8.0 pypi_0 pypi
kiwisolver 1.4.4 pypi_0 pypi
ld_impl_linux-64 2.40 h41732ed_0 conda-forge
libexpat 2.5.0 hcb278e6_1 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libgcc-ng 12.2.0 h65d4601_19 conda-forge
libgomp 12.2.0 h65d4601_19 conda-forge
libnsl 2.0.0 h7f98852_0 conda-forge
libsqlite 3.41.2 h2797004_1 conda-forge
libuuid 2.38.1 h0b41bf4_0 conda-forge
libzlib 1.2.13 h166bdaf_4 conda-forge
llvmlite 0.40.0 pypi_0 pypi
logical-unification 0.4.6 pypi_0 pypi
matplotlib 3.7.1 pypi_0 pypi
minikanren 1.0.3 pypi_0 pypi
multipledispatch 0.6.0 pypi_0 pypi
ncurses 6.3 h27087fc_1 conda-forge
numba 0.57.0 pypi_0 pypi
numpy 1.24.3 pypi_0 pypi
openssl 3.1.0 hd590300_3 conda-forge
packaging 23.1 pypi_0 pypi
pandas 2.0.1 pypi_0 pypi
pillow 9.5.0 pypi_0 pypi
pip 23.1.2 pyhd8ed1ab_0 conda-forge
pymc 5.3.1 pypi_0 pypi
pyparsing 3.0.9 pypi_0 pypi
pytensor 2.11.3 pypi_0 pypi
python 3.11.3 h2755cc3_0_cpython conda-forge
python-dateutil 2.8.2 pypi_0 pypi
pytz 2023.3 pypi_0 pypi
readline 8.2 h8228510_1 conda-forge
scipy 1.10.1 pypi_0 pypi
setuptools 67.7.2 pyhd8ed1ab_0 conda-forge
six 1.16.0 pypi_0 pypi
tk 8.6.12 h27826a3_0 conda-forge
toolz 0.12.0 pypi_0 pypi
typing-extensions 4.5.0 pypi_0 pypi
tzdata 2023.3 pypi_0 pypi
wheel 0.40.0 pyhd8ed1ab_0 conda-forge
xarray 2023.4.2 pypi_0 pypi
xarray-einstats 0.5.1 pypi_0 pypi
xz 5.2.6 h166bdaf_0 conda-forgeI used conda+conda-forge to create the env and install python 3.11, then installed everything with pip. Is everything else related to numba working correctly?
guin0x
ahartikainen
Vital-Fernandez
Describe the bug When numba is installed, Arviz's plot functions will keep running without any result.
After numba uninstalled, Arviz works well.
To Reproduce Run the following demo code from pymc.io
'az.plot_posteriror' will keep running without any plot generated.
Expected behavior A clear and concise description of what you expected to happen.
Additional context
The environment is a the following:
Packages (installed by pip):