Closed aloctavodia closed 4 weeks ago
In the meantime pymc has bin pinned <=5.15.1
def test_ppe_testdata(params): csv_data = pd.read_csv(r"testdata/chemical_shifts_theo_exp.csv") diff = csv_data.theo - csv_data.exp cat_encode = pd.Categorical(csv_data["aa"]) idx = cat_encode.codes coords = {"aa": cat_encode.categories} with pm.Model(coords=coords) as model: # hyper_priors a = pm.Normal("a", mu=0, sigma=10) b = pm.HalfNormal("b", 10) z = pm.HalfNormal("z", sigma=10) x = pm.Normal("x", mu=a, sigma=b, dims="aa") # No prior for this! y = pm.Normal("y", mu=x[idx], sigma=z, observed=diff) > prior, new_prior, pymc_string = pz.ppe(model, params["target"]) preliz/tests/test_ppe.py:109: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ preliz/predictive/ppe.py:57: in ppe bounds, prior, p_model, var_info, var_info2, draws, free_rvs = get_model_information(model) preliz/ppls/pymc_io.py:134: in get_model_information idxs = [free_rvs.index(var_) for var_ in nc_parents] _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ .0 = <list_iterator object at 0x7f5f97998880> > idxs = [free_rvs.index(var_) for var_ in nc_parents] E ValueError: ExpandDims{axis=0}.0 is not in list
In the meantime pymc has bin pinned <=5.15.1