Support for compressed VCF files

arvkevi / ezancestry

Easy genetic ancestry predictions in Python

https://ezancestry.streamlit.app

MIT License

56 stars 11 forks source link

Open dbrami opened 2 years ago

dbrami commented 2 years ago

Hi Kevin, I started to try playing with the script but I'm running into a few speed bumps that I thought I would share in different tickets):

does not support .vcf.gz files Not sure if BCF is more useful but for now, my data is in .vcf.gz

Is supporting compressed VCF hard to implement?

apriha commented 2 years ago

Hi @dbrami, gzip compressed VCF files are supported... Is the problem file provided here?