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arvkevi / ezancestry

Easy genetic ancestry predictions in Python
https://ezancestry.streamlit.app
MIT License
57 stars 11 forks source link

Add openSNP datadump ancestry analysis #7

Closed apriha closed 3 years ago

apriha commented 3 years ago

This PR adds the ability to analyze the ancestry of files in the openSNP datadump.

Co-authored with @arvkevi .

arvkevi commented 3 years ago

@apriha I'm getting a 404 when trying to get the resource. Do you know how to get this file?

apriha commented 3 years ago

Hi @gedankenstuecke, do you know if the openSNP datadump file is still available?

gedankenstuecke commented 3 years ago

Whops, sometimes our creation of that dump fails and then the file 404s. I'll kick our server to reprocess the file (but it can take around 12 hours or more to finish creating it!).

Let me know if the problem persists!

arvkevi commented 3 years ago

I was able to download the file, thanks @gedankenstuecke

arvkevi commented 3 years ago

With these two commits, the app and the openSNP analysis both work. @apriha can you take a look and make sure you're OK with the changes before I merge?

Also, I'll run all samples tonight and see what kind of visualizations we can get 😄

apriha commented 3 years ago

Those updates look great @arvkevi ! Thanks!

arvkevi commented 3 years ago

Thanks for the cool feature @apriha!