jelmerp
commented
5 months ago Presentation
| Aspect | Max. points | Your points |
|---|---|---|
| Technical content | 3 | 3 |
| Contextualization | 3 | 3 |
| Delivery | 3 | 2 |
| Clarity | 3 | 2 |
| Questions for others | 3 | 2 |
| total | 15 | 12 |
Good presentation!
Final submission
| Aspect | Max. points | Your points | Comment |
|---|---|---|---|
| Project organization | 4 | 4 | |
| Project background and documentation | 4 | 4 | |
| Good practices in scripts | 4 | 3 | |
| Workflow reproducibility | 4 | 4 | |
| Slurm jobs at OSC | 3 | 3 | |
| Project/coding quality | 3 | 3 | |
| Version control | 3 | 3 | |
| total | 25 | 24 |
Everything looks great, nice job! The only comment I have is that in the data.sh script, it would have been good to use an argument for the output dir instead of hardcoding it.
Hi Jelmer,
I'm attaching my report and files for our final project. I've analyzed the RNASeq data using two pipelines that we discussed in class and in our homework. You'll find my first pipeline in the "/fs/ess/PAS2700/users/aryalb/project/pipeline" directory and my second pipeline in the "/fs/ess/PAS2700/users/aryalb/project/nfc-rnaseq" directory.
Although I have almost entirely used code and scripts from our class, it was a bit challenging for me to run it on different dataset. Nevertheless, it was a valuable learning experience for me. Thank you!
@jelmerp