search

aryarm / as_analysis

A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
MIT License
10 stars 9 forks source link

multi-threading for gatk #3

Closed aryarm closed 6 years ago

aryarm commented 6 years ago

I think GenotypeVCFs can be multi-threaded. You should attempt to implement multi-threading with as many other GATK commands as possible.

aryarm commented 6 years ago

You might want to see how some snakemake wrappers do it