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aryarm / as_analysis

A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
MIT License
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rna version of allele.imbalance script #40

Closed aryarm closed 6 years ago

aryarm commented 6 years ago

add it to the pipeline and revise Snakefile-counts appropriately add an option to run the pipeline with the rna version instead of the dna+rna version

aryarm commented 6 years ago

or let the pipeline decide which version to use based on which inputs the user gives it? ;)