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aryarm / as_analysis

A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
MIT License
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improve use of STAR in Snakefile-WASP #42

Closed aryarm closed 6 years ago

aryarm commented 6 years ago

STAR should be called with the --alignEndsType EndToEnd argument to force reads to be globally aligned (instead of locally)